New version of CIEL concept dictionary added to dropbox

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(Andrew Kanter) #66

Is anyone still using Version 1.7 or 1.8?


(Andrew Kanter) #67

New version of CIEL dictionary added to dropbox for July 9, 2018.

Just wanted to let folks know that I am posting a new version of the CIEL concept dictionary in the dropbox with versions including 1.6.6, 1.9.9, 1.10.2, 1.11.4 and 2.0 and 2.1.

Can I please remind everyone using the CIEL dictionary that this is a trust model. We are providing the service to the community and the community assists by providing concepts they require back to CIEL. This also includes translation of CIEL concepts into other languages. If you have added concepts to your dictionary and have not reported them back to CIEL, I strongly encourage you to do so (if guilt doesn’t work, then I will start to harass you :).

If this is the first time you are hearing about the MVP/CIEL concept dictionary which now comes as a standard option with the standalone appliance, you can get updates from the CIEL dropbox. You can send me an email describing your openmrs implementation, version number, country and project… and I will add you to the dropbox.

Be sure to read the wiki: https://wiki.openmrs.org/display/docs/Getting+and+Using+the+MVP-CIEL+Concept+Dictionary11

NOTE THAT A NEW DISTRIBUTION METHODOLOGY FOR CIEL USING THE OPEN CONCEPT LAB WILL BE AVAILABLE SOON.

Each version includes the global property ciel.conceptsVersion which contains the date of the release in YYYYMMDD format. A new global property update was added for 1.11+ which will force recreation of the word index as this is no longer included as part of the CIEL upload.

This release contains new concepts for PIH and lots of French translations for existing concepts.

It also includes a separate drug table which contains all of the WHO essential medication list drugs linked to the concept table. The plan is to integrate these two more closely providing concept sets of drugs which parallel the WHO classifications. The drug table may eventually become a superset of international RxNorm encoded medications from which you can select from. For now, it is just the WHO EML. We will keep the SQL separate for now so that you don’t have to overwrite your local drug table when importing the CIEL concept dictionary.

The drug table was NOT updated for this release.

Concepts added for this release:

> "concept_id"	"name"	"Class"	"Datatype"	"description"
> "165161"	"Ultrasound of veins of right upper extremity"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165161"	"Upper extremity vein - Right (US)"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165160"	"Ultrasound of vein of left upper extremity"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165160"	"Upper extremity vein - Left (US)"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165159"	"Ultrasound of veins of both upper extremities"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165159"	"Upper extremity vein - Bilateral (US)"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165158"	"Thoracic spine without contrast (CT)"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165158"	"Computed tomography of thoracic spine without contrast"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165157"	"X-ray of right ankle, three views"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165157"	"Ankle - Right, 3 views (x-ray)"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165157"	"X-ray of right ankle, 3 views"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165156"	"Ankle - Left, 3 views (x-ray)"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165156"	"X-ray of left ankle, 3 views"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165156"	"X-ray of left ankle, three views"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165155"	"Computerized tomography of bilateral lower extremities without contrast"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165155"	"Computed tomography of both lower extremities without contrast"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165154"	"Pelvis with and without contrast IV (CT)"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165154"	"Computed tomography of pelvis without then with intravenous contrast"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165153"	"Chest without contrast (CT)"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165153"	"Computed tomography of chest without contrast"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165152"	"Chest, 1 view (x-ray)"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165152"	"X-ray of chest, 1 view"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165152"	"Chest x-ray, single view"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165151"	"Computed tomography of pelvis without contrast"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165151"	"Pelvis without contrast (CT)"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165150"	"Computerized tomography of neck without contrast"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165150"	"Neck without contrast (CT)"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165149"	"Neck soft tissue (x-ray)"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165149"	"X-ray of soft tissue of neck"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165148"	"X-ray of skull, two views"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165148"	"Skull, 2 views (x-ray)"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165148"	"X-ray of skull, 2 views"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165147"	"Fistulogram (x-ray)"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165147"	"Fistulogram"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165147"	"X-ray of fistula or sinus tract with contrast"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165146"	"Retrograde cystography (x-ray)"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165146"	"Retrograde cystography"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165145"	"X-ray of thoracolumbar spine, two standing views for scoliosis"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165145"	"X-ray of thoracolumbar spine, 2 standing views for scoliosis"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165144"	"Colon with Barium contrast (Flouroscopy)"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165144"	"Flouroscopy of colon with barium contrast"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165143"	"X-ray of unilateral ribs and single view chest"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165142"	"Abdomen and pelvis without contrast (CT)"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165142"	"CT of abdomen and pelvis without contrast"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165142"	"Computerized tomography of abdomen and pelvis without contrast"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165141"	"Abdomen without contrast (CT)"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165141"	"CT scan of abdomen without contrast"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165141"	"Computerized tomography of abdomen without contrast"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165140"	"X-ray of both knees, six views"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165140"	"X-ray of bilateral knees, six views"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165140"	"Bilateral knees, 6 views (x-ray)"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165140"	"X-ray of bilateral knees, 6 views"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165139"	"X-ray of ribs, 2 views"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165139"	"X-ray of ribs, two views"	"Radiology/Imaging Procedure"	"N/A"	\N
> "165139"	"Ribs, 2 views (x-ray)"	"Radiology/Imaging Procedure"	"N/A"	\N

(Andrew Kanter) #68

Just added 1.7.3 and 1.8.3 to the dropbox. Is anyone still using those versions?? #CIEL @OpenMRS


(Stephen Senkomago Musoke) #69

@akanter is it possible to also share links to the Concept Dictionary files for download? This could be easier as sharing dropbox folders consumes any allocated space


(Andrew Kanter) #70

Not really. I will move older versions to a different folder but the current release will always be in the folder. The names change.

Andrew S. Kanter, MD MPH FACMI Akanter@e-imo.com +1.646.469.2421


(Stephen Senkomago Musoke) #71

@akanter That will be excellent


(Andrew Kanter) #72

New version of CIEL dictionary added to dropbox for October 12, 2018.

Just wanted to let folks know that I am posting a new version of the CIEL concept dictionary in the dropbox with versions including 1.6.6, 1.9.9, 1.10.2, 1.11.4 and 2.0 and 2.1.

Can I please remind everyone using the CIEL dictionary that this is a trust model. We are providing the service to the community and the community assists by providing concepts they require back to CIEL. This also includes translation of CIEL concepts into other languages. If you have added concepts to your dictionary and have not reported them back to CIEL, I strongly encourage you to do so (if guilt doesn’t work, then I will start to harass you :).

If this is the first time you are hearing about the MVP/CIEL concept dictionary which now comes as a standard option with the standalone appliance, you can get updates from the CIEL dropbox. You can send me an email describing your openmrs implementation, version number, country and project… and I will add you to the dropbox.

Be sure to read the wiki: https://wiki.openmrs.org/display/docs/Getting+and+Using+the+MVP-CIEL+Concept+Dictionary11

NOTE THAT A NEW DISTRIBUTION METHODOLOGY FOR CIEL USING THE OPEN CONCEPT LAB WILL BE AVAILABLE SOON.

Each version includes the global property ciel.conceptsVersion which contains the date of the release in YYYYMMDD format. A new global property update was added for 1.11+ which will force recreation of the word index as this is no longer included as part of the CIEL upload.

This release contains new concepts for PIH and a few other requests.

It also includes a separate drug table which contains all of the WHO essential medication list drugs linked to the concept table. The plan is to integrate these two more closely providing concept sets of drugs which parallel the WHO classifications. The drug table may eventually become a superset of international RxNorm encoded medications from which you can select from. For now, it is just the WHO EML. We will keep the SQL separate for now so that you don’t have to overwrite your local drug table when importing the CIEL concept dictionary.

The drug table was NOT updated for this release.

Concepts added for this release:

“concept_id” “name” “Class” “Datatype” “description”
“165188” “Severe traumatic brain injury” “Diagnosis” “N/A” “Traumatic injury to brain with Glasgow Coma Scale (GCS) of 8 or less.”
“165187” “Moderate traumatic brain injury” “Diagnosis” “N/A” “Traumatic injury to brain with Glasgow Coma Scale (GCS) of 9-12.”
“165187” “Moderate TBI (traumatic brain injury)” “Diagnosis” “N/A” “Traumatic injury to brain with Glasgow Coma Scale (GCS) of 9-12.”
“165186” “Mild traumatic brain injury” “Diagnosis” “N/A” “Traumatic injury to brain with Glasgow Coma Scale (GCS) of 13 or greater.”
“165186” “Mild TBI (traumatic brain injury)” “Diagnosis” “N/A” “Traumatic injury to brain with Glasgow Coma Scale (GCS) of 13 or greater.”
“165185” “GAD-7 score” “Finding” “Numeric” \N
“165185” “Generalized anxiety disorder 7 item score” “Finding” “Numeric” \N
“165184” “Administration of generalized anxiety disorder 7 assessment tool” “Procedure” “N/A” \N
“165183” “Supply stock out” “Misc” “N/A” \N
“165183” “Insufficient supplies” “Misc” “N/A” \N
“165183” “Supplies not available” “Misc” “N/A” \N
“165182” “Reason for no lab test performed” “Question” “Coded” \N
“165182” “Reason lab procedure not performed” “Question” “Coded” \N
“165181” “Inappropriate sample container used” “Misc” “N/A” \N
“165181” “Inappropriate specimen container used” “Misc” “N/A” \N
“165180” “Blood specimen coagulated” “Misc” “N/A” “Blood specimen insufficient for analysis due to coagulation.”
“165180” “Blood sample coagulated” “Misc” “N/A” “Blood specimen insufficient for analysis due to coagulation.”
“165179” “Equipment failure” “Misc” “N/A” \N
“165179” “Equipment malfunction” “Misc” “N/A” \N
“165178” “Insufficient specimen” “Misc” “N/A” “Insufficient volume or mass of sample/specimen to evaluate.”
“165178” “Insufficient sample” “Misc” “N/A” “Insufficient volume or mass of sample/specimen to evaluate.”
“165177” “Urine pH measurement” “Test” “Numeric” \N
“165176” “Serum pH measurement” “Test” “Numeric” \N
“165175” “Chemotherapy set” “ConvSet” “N/A” “Convenience set grouping together chemotherapy concepts”
“165174” “Repair of occipital encephalocele” “Procedure” “N/A” \N
“165173” “Repair of frontonasal encephalocele” “Procedure” “N/A” \N
“165172” “Single cycle status” “Question” “Coded” \N
“165171” “mg/m2” “Misc” “N/A” \N
“165171” “Milligram per meter squared” “Misc” “N/A” \N
“165171” “Milligram per meter2” “Misc” “N/A” \N
“165170” “Cancelled” “Misc” “N/A” “The status of an activity that was not performed.”
“165169” “Administered dose” “ConvSet” “N/A” \N
“165168” “Post-medication” “Misc” “N/A” “A medication given after a procedure or protocol.”
“165168” “Post medication” “Misc” “N/A” “A medication given after a procedure or protocol.”
“165167” “Premedication” “Misc” “N/A” “A medication used prior to a procedure or treatment protocol.”
“165167” “Pre-medication” “Misc” “N/A” “A medication used prior to a procedure or treatment protocol.”
“165166” “Excision of lipoma” “Procedure” “N/A” \N
“165165” “Repair of encephalocele with cranioplasty” “Procedure” “N/A” \N
“165164” “Repair of meningoencephalocele” “Procedure” “N/A” \N
“165163” “Repair of encephalocele” “Procedure” “N/A” \N
“165162” “Foul smelling vaginal discharge” “Diagnosis” “N/A” \N

(Andrew Kanter) #73

Also, if you are using CIEL and haven’t filled out this, please do (deadline in 3 days):

The Regenstrief Institute at Indiana University is conducting a survey to understand the overarching utilization and impact of OpenMRS. This information is intended to inform the development and implementation of an M&E framework for OpenMRS implementation sites.

The last publicly available implementer survey was conducted in 2012 and covered only eight (8) implementation sites. This survey attempts to systematically capture data from a larger representative sample of implementations (active and closed). The results of this survey will be disseminated to the widest possible audience of implementers as well as shared on Talk and other OpenMRS Forums. This information will give us a broader understanding of the use of OpenMRS globally. De-identified, aggregate (by region) survey data will be made publicly available to the community through a report and a peer-reviewed publication.

If you are an organization that is currently using or has previously used OpenMRS (in any form or distribution), please fill out this survey form: https://tinyurl.com/openmrs-survey . We estimate no more than 20 - 30 minutes to complete the survey. We will be accepting responses until October 15th, 2018 .

We thank you for your interest in sharing your experience & learnings for the benefit of the OpenMRS community!

Sincerely,

Regenstrief Institute, IUPUI Research Group

IUPUI IRB study number: 1802346617

Principal Investigator: Dr. Theresa Cullen, Adjunct Associate Professor of Health Informatics


(Andrew Kanter) #74

New version of CIEL dictionary added to dropbox for December 14, 2018.

Just wanted to let folks know that I am posting a new version of the CIEL concept dictionary in the dropbox with versions including 1.6.6, 1.9.9, 1.10.2, 1.11.4 and 2.0 and 2.1.

Can I please remind everyone using the CIEL dictionary that this is a trust model. We are providing the service to the community and the community assists by providing concepts they require back to CIEL. This also includes translation of CIEL concepts into other languages. If you have added concepts to your dictionary and have not reported them back to CIEL, I strongly encourage you to do so (if guilt doesn’t work, then I will start to harass you :).

If this is the first time you are hearing about the MVP/CIEL concept dictionary which now comes as a standard option with the standalone appliance, you can get updates from the CIEL dropbox. You can send me an email describing your openmrs implementation, version number, country and project… and I will add you to the dropbox.

Be sure to read the wiki: https://wiki.openmrs.org/display/docs/Getting+and+Using+the+MVP-CIEL+Concept+Dictionary11

NOTE THAT A NEW DISTRIBUTION METHODOLOGY FOR CIEL USING THE OPEN CONCEPT LAB WILL BE AVAILABLE SOON.

Each version includes the global property ciel.conceptsVersion which contains the date of the release in YYYYMMDD format. A new global property update was added for 1.11+ which will force recreation of the word index as this is no longer included as part of the CIEL upload.

This release contains new concepts for PIH and OpenSRP.

It also includes a separate drug table which contains all of the WHO essential medication list drugs linked to the concept table. The plan is to integrate these two more closely providing concept sets of drugs which parallel the WHO classifications. The drug table may eventually become a superset of international RxNorm encoded medications from which you can select from. For now, it is just the WHO EML. We will keep the SQL separate for now so that you don’t have to overwrite your local drug table when importing the CIEL concept dictionary.

The drug table was NOT updated for this release.

Concepts added for this release:

“concept_id” “name” “Class” “Datatype” “description”
“165213” “Secondary medical disclosure contact construct” “ConvSet” “N/A” \N
“165212” “Primary medical disclosure contact construct” “ConvSet” “N/A” \N
“165211” “Responsible person before the law construct” “ConvSet” “N/A” \N
“165210” “Emergency contact construct” “ConvSet” “N/A” \N
“165209” “Contact sequence number” “Question” “Numeric” \N
“165208” “Diabetes mellitus, type II, non-insulin-dependent” “Diagnosis” “N/A” \N
“165208” “Non-insulin dependent type 2 diabetes mellitus” “Diagnosis” “N/A” \N
“165207” “Diabetes mellitus, type II, insulin-dependent” “Diagnosis” “N/A” \N
“165207” “Insulin dependent type 2 diabetes mellitus” “Diagnosis” “N/A” \N
“165206” “Hypertension, stage 1” “Diagnosis” “N/A” “Elevated blood pressure <140/90 without a diagnosis of hypertension.”
“165206” “Prehypertension” “Diagnosis” “N/A” “Elevated blood pressure <140/90 without a diagnosis of hypertension.”
“165206” “Pre-hypertension” “Diagnosis” “N/A” “Elevated blood pressure <140/90 without a diagnosis of hypertension.”
“165205” “Severe hypertension” “Diagnosis” “N/A” “Diagnosis of hypertension with blood pressure >180/110”
“165205” “Hypertension, stage 4” “Diagnosis” “N/A” “Diagnosis of hypertension with blood pressure >180/110”
“165204” “Hypertension, stage 3” “Diagnosis” “N/A” “Hypertension diagnosis with blood pressure >=160/100 and < 180/110”
“165204” “Moderate hypertension” “Diagnosis” “N/A” “Hypertension diagnosis with blood pressure >=160/100 and < 180/110”
“165203” “Hypertension, stage 2” “Diagnosis” “N/A” “Diagnosis of hypertension with blood pressure >=140/90 but <160/100”
“165203” “Mild hypertension” “Diagnosis” “N/A” “Diagnosis of hypertension with blood pressure >=140/90 but <160/100”
“165202” “Miner” “Misc” “N/A” “Occupation of mining/mineral extraction”
“165201” “Factory worker” “Misc” “N/A” \N
“165200” “Shepherd” “Misc” “N/A” “Occupation of watching livestock.”
“165199” “Country of birth” “Question” “Text” \N
“165198” “Country of residence” “Question” “Text” \N
“165197” “Province of residence” “Question” “Text” “Name of province of residence.”
“165196” “Communal section” “Question” “Text” “Part of a residential address. Used in Haiti.”
“165195” “Locality” “Question” “Text” “Residential locality. Part of an address construct used in Haiti.”
“165194” “Place of birth address construct” “ConvSet” “N/A” \N
“165193” “Danger sign: edema of hands or face” “Finding” “N/A” \N
“165193” “Danger sign: swelling of hands or face” “Finding” “N/A” \N
“165192” “Presbyterian church” “Misc” “N/A” \N
“165191” “Church of the Nazarine” “Misc” “N/A” \N
“165190” “Methodist church” “Misc” “N/A” \N
“165190” “Methodist religion” “Misc” “N/A” \N
“165189” “Protestant religion” “Misc” “N/A” \N