Proposing Addition of Head circumference Concept to MVP-CIEL

mozzy · July 24, 2019, 7:32am

Following the discussions around Inclusion of the Growth Chart feature into Reff app 2.10.

I would want to propose addition of the Head circumference Concept to CIEL, as it is one of the concepts on which the Growth chart feature is based on.

see PR.

Here is the Head circumference Concept from the isanteplus server.

cc @dkayiwa @k.joseph @ball @akanter @c.antwi @darius

mozzy · July 24, 2019, 10:40am

instead of using a Concept id in this Global prob , i would need to use a UUID , But @akanter would first have to add this concept to CIEL and we get the standard UUID

akanter · July 24, 2019, 12:58pm

Head circumference is already there in cm. Ciel 5314.

Andrew S. Kanter, MD MPH FACMI Akanter@e-imo.com +1.646.469.2421

mozzy · July 24, 2019, 1:19pm

i think i was mistaken that openmrs standalone comes with CIEL by default. i was testing out that from the default concepts that comes with ref app.

akanter · July 24, 2019, 1:52pm

That is a natural thing to do. We need to add that concept to the default concepts required by the Ref app.

Andy

mozzy · July 24, 2019, 2:02pm

Am not so good at using the OCL , is what named as External ID: , the same as UUID ??

. I want to use the concept UUID as the global property configurable value instead of concept id .

ball · July 24, 2019, 2:10pm

Perfect guess @mozzy . External ID in OCL is the concept uuid.

mozzy · July 29, 2019, 8:04am

cc @akanter @dkayiwa @c.antwi @ball . We need to add that concept to the default concepts that come with reff app

akanter · July 29, 2019, 2:24pm

To be honest, I am not sure what the code is that does the concept extraction. I know that it uses the latest release of CIEL, but not how the concepts are selected for inclusion.

ball · July 29, 2019, 2:40pm

This is a great question @mozzy. I’m not positive, but I think you would modify the openmrs-module-referencemetadata, by adding the CIEL concept for head circumference:

github.com

openmrs/openmrs-module-referencemetadata/blob/master/api/src/main/resources/Reference_Application_Concepts-24.xml

<?xml version='1.0' encoding='UTF-8'?>
<dataset>
  <concept_datatype concept_datatype_id="1" name="Numeric" hl7_abbreviation="NM" description="Numeric value, including integer or float (e.g., creatinine, weight)" creator="1" date_created="2004-02-02 00:00:00.0" retired="false" retired_by="1" uuid="8d4a4488-c2cc-11de-8d13-0010c6dffd0f"/>
  <concept_datatype concept_datatype_id="2" name="Coded" hl7_abbreviation="CWE" description="Value determined by term dictionary lookup (i.e., term identifier)" creator="1" date_created="2004-02-02 00:00:00.0" retired="false" retired_by="1" uuid="8d4a48b6-c2cc-11de-8d13-0010c6dffd0f"/>
  <concept_datatype concept_datatype_id="3" name="Text" hl7_abbreviation="ST" description="Free text" creator="1" date_created="2004-02-02 00:00:00.0" retired="false" retired_by="1" uuid="8d4a4ab4-c2cc-11de-8d13-0010c6dffd0f"/>
  <concept_datatype concept_datatype_id="4" name="N/A" hl7_abbreviation="ZZ" description="Not associated with a datatype (e.g., term answers, sets)" creator="1" date_created="2004-02-02 00:00:00.0" retired="false" retired_by="1" uuid="8d4a4c94-c2cc-11de-8d13-0010c6dffd0f"/>
  <concept_datatype concept_datatype_id="6" name="Date" hl7_abbreviation="DT" description="Absolute date" creator="1" date_created="2004-07-22 00:00:00.0" retired="false" retired_by="1" uuid="8d4a505e-c2cc-11de-8d13-0010c6dffd0f"/>
  <concept_class concept_class_id="1" name="Test" description="Acq. during patient encounter (vitals, labs, etc.)" creator="1" date_created="2004-02-02 00:00:00.0" retired="false" retired_by="1" uuid="8d4907b2-c2cc-11de-8d13-0010c6dffd0f"/>
  <concept_class concept_class_id="3" name="Drug" description="Drug" creator="1" date_created="2004-02-02 00:00:00.0" retired="false" retired_by="1" uuid="8d490dfc-c2cc-11de-8d13-0010c6dffd0f"/>
  <concept_class concept_class_id="4" name="Diagnosis" description="Conclusion drawn through findings" creator="1" date_created="2004-02-02 00:00:00.0" retired="false" retired_by="1" uuid="8d4918b0-c2cc-11de-8d13-0010c6dffd0f"/>
  <concept_class concept_class_id="5" name="Finding" description="Practitioner observation/finding" creator="1" date_created="2004-03-02 00:00:00.0" retired="false" retired_by="1" uuid="8d491a9a-c2cc-11de-8d13-0010c6dffd0f"/>
  <concept_class concept_class_id="7" name="Question" description="Question (eg, patient history, SF36 items)" creator="1" date_created="2004-03-02 00:00:00.0" retired="false" retired_by="1" uuid="8d491e50-c2cc-11de-8d13-0010c6dffd0f"/>
  <concept_class concept_class_id="10" name="ConvSet" description="Term to describe convenience sets" creator="1" date_created="2004-03-02 00:00:00.0" retired="false" retired_by="1" uuid="8d492594-c2cc-11de-8d13-0010c6dffd0f"/>
  <concept_class concept_class_id="11" name="Misc" description="Terms which don&apos;t fit other categories" creator="1" date_created="2004-03-02 00:00:00.0" retired="false" retired_by="1" uuid="8d492774-c2cc-11de-8d13-0010c6dffd0f"/>
  <concept_class concept_class_id="12" name="Symptom" description="Patient-reported observation" creator="1" date_created="2004-10-04 00:00:00.0" retired="false" retired_by="1" uuid="8d492954-c2cc-11de-8d13-0010c6dffd0f"/>
  <concept_class concept_class_id="13" name="Symptom/Finding" description="Observation that can be reported from patient or found on exam" creator="1" date_created="2004-10-04 00:00:00.0" retired="false" retired_by="1" uuid="8d492b2a-c2cc-11de-8d13-0010c6dffd0f"/>
  <concept_class concept_class_id="24" name="Pharmacologic Drug Class" description="Class of medications based on pharmacologic properties as opposed to therapeutic properties" creator="1" date_created="2014-02-07 22:16:02.0" retired="false" retired_by="1" uuid="b4535251-9183-4175-959e-9ee67dc71e78"/>
  <concept concept_id="108" retired="false" datatype_id="4" class_id="12" is_set="false" creator="1" date_created="2004-01-01 00:00:00.0" version="" changed_by="1" date_changed="2015-11-05 01:34:22.0" retired_by="1" uuid="108AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA"/>
  <concept concept_id="121" retired="false" datatype_id="4" class_id="5" is_set="false" creator="1" date_created="2004-01-01 00:00:00.0" version="" changed_by="1" date_changed="2015-11-05 01:37:39.0" retired_by="1" uuid="121AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA"/>
  <concept concept_id="512" retired="false" datatype_id="2" class_id="13" is_set="false" creator="1" date_created="2004-01-01 00:00:00.0" version="596285" changed_by="1" date_changed="2016-04-27 14:18:52.0" retired_by="1" uuid="512AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA"/>

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You might also need to update the version in this file:

github.com

openmrs/openmrs-module-referencemetadata/blob/master/api/src/main/java/org/openmrs/module/referencemetadata/ReferenceMetadataConstants.java

package org.openmrs.module.referencemetadata;

/**
 *
 */
public class ReferenceMetadataConstants {

    public final static String OPENMRS_ID_NAME = "OpenMRS ID";
    public final static String OPENMRS_ID_DESCRIPION = "OpenMRS patient identifier, with check-digit";
    public final static String OPENMRS_ID_UUID = "05a29f94-c0ed-11e2-94be-8c13b969e334";

    public final static String OPENMRS_ID_GENERATOR_UUID = "691eed12-c0f1-11e2-94be-8c13b969e334";
    public final static String OPENMRS_ID_GENERATOR_NAME = "Generator for " + OPENMRS_ID_NAME;

    public final static String UNKNOWN_LOCATION_UUID = "8d6c993e-c2cc-11de-8d13-0010c6dffd0f";
    
    public static final String VISIT_LOCATION_TAG_UUID = "37dd4458-dc9e-4ae6-a1f1-789c1162d37b";
	
	public static final String ADMISSION_LOCATION_TAG_UUID = "1c783dca-fd54-4ea8-a0fc-2875374e9cb6";

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mozzy · August 12, 2019, 8:40am

i have created a ticket for this

robertelite · December 10, 2021, 12:54pm

your information is very interesting and good question but i am not idea.