NPE in patient registration

mvicky · July 19, 2022, 6:17am

I am trying to setup openmrs in advanced mode. I have set the spa.remote.enabled global setting to true and able see the openmrs 3.x front end components and able to login. When I try to create a new patient record I am getting the following exception.

The modules being used:

spa-1.0.8.omod
webservices.rest-2.32.0.omod
fhir2-1.2.2.omod
referenceapplication-2.12.0-SNAPSHOT.omod

The Browser logs:

openmrs-esm-form-entry-app.js:1 Uncaught Stacktrace for outgoing request: Error: Server responded with 500 () for url /openmrs/ws/rest/v1/patient/. Check err.responseBody or network tab in dev tools for more info

Server logs:

18-Jul-2022 22:16:24.197 SEVERE [http-nio-8080-exec-5] org.apache.catalina.core.StandardWrapperValve.invoke Servlet.service() for servlet [openmrs] in context with path [/openmrs] threw exception [Request processing failed; nested exception is org.openmrs.module.webservices.rest.web.response.ConversionException: attributes on class org.openmrs.Person] with root cause java.lang.NullPointerException at org.openmrs.module.webservices.rest.web.v1_0.resource.openmrs1_8.PersonAttributeResource1_8.setAttributeType(PersonAttributeResource1_8.java:222) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.openmrs.module.webservices.rest.web.resource.impl.BaseDelegatingResource.setProperty(BaseDelegatingResource.java:787) at org.openmrs.module.webservices.rest.web.ConversionUtil.convertMap(ConversionUtil.java:322) at org.openmrs.module.webservices.rest.web.ConversionUtil.convert(ConversionUtil.java:272) at org.openmrs.module.webservices.rest.web.ConversionUtil.convert(ConversionUtil.java:213) at org.openmrs.module.webservices.rest.web.resource.impl.BaseDelegatingResource.setProperty(BaseDelegatingResource.java:786) at org.openmrs.module.webservices.rest.web.ConversionUtil.convertMap(ConversionUtil.java:322) at org.openmrs.module.webservices.rest.web.ConversionUtil.convert(ConversionUtil.java:272) at org.openmrs.module.webservices.rest.web.v1_0.resource.openmrs1_8.PatientResource1_8.getPatient(PatientResource1_8.java:237) at org.openmrs.module.webservices.rest.web.v1_0.resource.openmrs1_8.PatientResource1_8.create(PatientResource1_8.java:222) at org.openmrs.module.webservices.rest.web.v1_0.controller.MainResourceController.create(MainResourceController.java:91) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.springframework.web.method.support.InvocableHandlerMethod.doInvoke(InvocableHandlerMethod.java:190) at org.springframework.web.method.support.InvocableHandlerMethod.invokeForRequest(InvocableHandlerMethod.java:138) at org.springframework.web.servlet.mvc.method.annotation.ServletInvocableHandlerMethod.invokeAndHandle(ServletInvocableHandlerMethod.java:105) at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.invokeHandlerMethod(RequestMappingHandlerAdapter.java:878) at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.handleInternal(RequestMappingHandlerAdapter.java:792) at org.springframework.web.servlet.mvc.method.AbstractHandlerMethodAdapter.handle(AbstractHandlerMethodAdapter.java:87) at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:1040) at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:943) at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:1006) at org.springframework.web.servlet.FrameworkServlet.doPost(FrameworkServlet.java:909) at javax.servlet.http.HttpServlet.service(HttpServlet.java:681) at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:883) at javax.servlet.http.HttpServlet.service(HttpServlet.java:764) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:231) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) at org.openmrs.module.web.filter.ForcePasswordChangeFilter.doFilter(ForcePasswordChangeFilter.java:60) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) at org.apache.catalina.filters.CorsFilter.handleNonCORS(CorsFilter.java:368) at org.apache.catalina.filters.CorsFilter.doFilter(CorsFilter.java:174) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) at org.openmrs.module.web.filter.ModuleFilterChain.doFilter(ModuleFilterChain.java:73) at org.openmrs.web.filter.GZIPFilter.doFilterInternal(GZIPFilter.java:65) at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:119) at org.openmrs.module.web.filter.ModuleFilterChain.doFilter(ModuleFilterChain.java:71) at org.openmrs.module.webservices.rest.web.filter.AuthorizationFilter.doFilter(AuthorizationFilter.java:105) at org.openmrs.module.web.filter.ModuleFilterChain.doFilter(ModuleFilterChain.java:71) at org.openmrs.module.webservices.rest.web.filter.ContentTypeFilter.doFilter(ContentTypeFilter.java:64) at org.openmrs.module.web.filter.ModuleFilterChain.doFilter(ModuleFilterChain.java:71) at org.springframework.web.filter.ShallowEtagHeaderFilter.doFilterInternal(ShallowEtagHeaderFilter.java:106) at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:119) at org.openmrs.module.web.filter.ModuleFilterChain.doFilter(ModuleFilterChain.java:71) at org.openmrs.module.owa.filter.OwaFilter.doFilter(OwaFilter.java:93) at org.openmrs.module.owa.filter.OwaFilter.doFilter(OwaFilter.java:61) at org.openmrs.module.web.filter.ModuleFilterChain.doFilter(ModuleFilterChain.java:71) at org.openmrs.module.spa.filter.SpaFilter.doFilter(SpaFilter.java:53) at org.openmrs.module.web.filter.ModuleFilterChain.doFilter(ModuleFilterChain.java:71) at org.openmrs.module.web.filter.ModuleFilter.doFilter(ModuleFilter.java:57) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) at org.openmrs.web.filter.OpenmrsFilter.doFilterInternal(OpenmrsFilter.java:105) at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:119) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) at org.springframework.orm.hibernate5.support.OpenSessionInViewFilter.doFilterInternal(OpenSessionInViewFilter.java:156) at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:119) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) at org.openmrs.web.filter.StartupFilter.doFilter(StartupFilter.java:108) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) at org.openmrs.web.filter.StartupFilter.doFilter(StartupFilter.java:108) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) at org.openmrs.web.filter.StartupFilter.doFilter(StartupFilter.java:108) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:201) at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:119) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166) at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:197) at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:97) at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:543) at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:135) at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:92) at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:698) at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:78) at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:367) at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:639) at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:65) at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:882) at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1647) at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49) at org.apache.tomcat.util.threads.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1191) at org.apache.tomcat.util.threads.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:659) at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61) at java.lang.Thread.run(Thread.java:748)

dkayiwa · July 19, 2022, 10:37am

Are you able to reproduce that here? https://dev3.openmrs.org/

mvicky · July 19, 2022, 2:53pm

@dkayiwa I see a different exception on https://dev3.openmrs.org/

openmrs-esm-form-entry-app.js:1 POST https://dev3.openmrs.org/openmrs/ws/rest/v1/patient/ 400 (Bad Request)

In my case I was getting 500 internal server error.

mvicky · July 19, 2022, 2:56pm

Along with the previous exception I see the cors errors in browser logs.

Access to fetch at ‘https://spa-modules.nyc3.cdn.digitaloceanspaces.com/@openmrs/esm-home-app/2022-06-29_0284a104d3346f82a8393a8141ba5be0d08d68e3/574.openmrs-esm-home-app.js’ from origin ‘https://dev3.openmrs.org’ has been blocked by CORS policy: No ‘Access-Control-Allow-Origin’ header is present on the requested resource. If an opaque response serves your needs, set the request’s mode to ‘no-cors’ to fetch the resource with CORS disabled.

dkayiwa · July 19, 2022, 6:51pm

On your local machine, do you have these person attribute types? OpenMRS - Login

mvicky · July 19, 2022, 7:16pm

I do have the following attributes.

dkayiwa · July 19, 2022, 7:28pm

Are they the same as on dev3?

mvicky · July 19, 2022, 7:42pm

In my local setup we see the following diff

We do not have the email field
Instead of “unknown patient” we have “test patient”

dkayiwa · July 19, 2022, 8:48pm

Can you ensure that you have exactly the same as on dev3?

mvicky · July 20, 2022, 3:12am

even after making my local setup to have same set of attributes as dev3 I still see the same exception

19-Jul-2022 22:06:04.401 SEVERE [http-nio-8080-exec-1] org.apache.catalina.core.StandardWrapperValve.invoke Servlet.service() for servlet [openmrs] in context with path [/openmrs] threw exception [Request processing failed; nested exception is org.openmrs.module.webservices.rest.web.response.ConversionException: attributes on class org.openmrs.Person] with root cause java.lang.NullPointerException at org.openmrs.module.webservices.rest.web.v1_0.resource.openmrs1_8.PersonAttributeResource1_8.setAttributeType(PersonAttributeResource1_8.java:222) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.openmrs.module.webservices.rest.web.resource.impl.BaseDelegatingResource.setProperty(BaseDelegatingResource.java:787) at org.openmrs.module.webservices.rest.web.ConversionUtil.convertMap(ConversionUtil.java:322) at org.openmrs.module.webservices.rest.web.ConversionUtil.convert(ConversionUtil.java:272) at org.openmrs.module.webservices.rest.web.ConversionUtil.convert(ConversionUtil.java:213) at org.openmrs.module.webservices.rest.web.resource.impl.BaseDelegatingResource.setProperty(BaseDelegatingResource.java:786) at org.openmrs.module.webservices.rest.web.ConversionUtil.convertMap(ConversionUtil.java:322) at org.openmrs.module.webservices.rest.web.ConversionUtil.convert(ConversionUtil.java:272) at org.openmrs.module.webservices.rest.web.v1_0.resource.openmrs1_8.PatientResource1_8.getPatient(PatientResource1_8.java:237) at org.openmrs.module.webservices.rest.web.v1_0.resource.openmrs1_8.PatientResource1_8.create(PatientResource1_8.java:222) at org.openmrs.module.webservices.rest.web.v1_0.controller.MainResourceController.create(MainResourceController.java:91)

mvicky · July 20, 2022, 3:22am

here is the request being submitted to the server {“uuid”:“c446cc4a-b8c9-4ddd-883a-8052c143bc7c”,“person”:{“uuid”:“c446cc4a-b8c9-4ddd-883a-8052c143bc7c”,“names”:[{“preferred”:true,“givenName”:“test”,“middleName”:“test”,“familyName”:“test”}],“gender”:“F”,“birthdate”:“1990-1-1”,“birthdateEstimated”:false,“attributes”:[{“attributeType”:“14d4f066-15f5-102d-96e4-000c29c2a5d7”,“value”:“5108153143”},{“attributeType":“ac7d7773-fe9f-11ec-8b9b-0242ac1b0002”,“value”:"test@test.com”}],“addresses”:[{“postalCode”:“75063”,“address2”:“MacArthur Blvd”,“address1”:“8605”,“country”:“usa”,“stateProvince”:“”,“cityVillage”:“irving”}],“dead”:false},“identifiers”:[{“identifier”:“1001A7”,“identifierType”:“05a29f94-c0ed-11e2-94be-8c13b969e334”,“preferred”:true}]}

dkayiwa · July 20, 2022, 9:59am

Does your database have person attribute types with the uuids in your submission?

mvicky · July 20, 2022, 1:07pm

We did not change any database schema, this is the default schema we have.

patient table schema:

mvicky · July 20, 2022, 1:08pm

person table schema:

dkayiwa · July 20, 2022, 1:31pm

This is what i mean:

Do you have a person attribute type with this uuid? 14d4f066-15f5-102d-96e4-000c29c2a5d7

Do you also have another person attribute type with this uuid? ac7d7773-fe9f-11ec-8b9b-0242ac1b0002

mvicky · July 20, 2022, 3:26pm

@dkayiwa The email uuid is not matching to the one available on database. I have a query, how the ui able to pick a wrong uuid?

dkayiwa · July 20, 2022, 4:32pm

Change the one in your database to match the one in the query.

mvicky · July 20, 2022, 5:04pm

Thank you for the direction @dkayiwa. That works. It looks the integrity between the 3.x ui and the database scripts is not maintained. Please let me know, If I can do something to fix it.

mvicky · July 20, 2022, 5:54pm

I see a similar follow up exception on the appointments

It is again pointing to unavailable patientUuid. the database records are having a different uuids.

for the request

{patientUuid: “0e2d4a9f-0d4d-47a9-af4a-c9d59bd04a70”, startDate: “2022-01-20T18:39:36.597Z”}

Am I missing something in my setup process? Can you please help?

The exception:

org.openmrs.module.webservices.rest.web.response.UnknownResourceException: Unknown resource: v1/appointments org.openmrs.module.webservices.rest.web.api.impl.RestServiceImpl.getResourceByName(RestServiceImpl.java:416) sun.reflect.GeneratedMethodAccessor717.invoke(Unknown Source)

dkayiwa · July 20, 2022, 5:55pm

I think 3.x is going to be shipping metadata that includes the expected person attributes with the required uuids.