Following this Talk thread OpenMRS COVID-19 Response ,
We decided to update reference Application Metadata Packages with Covid-19 related Concepts , that have been added to the CIEL of recent.
I have built a new Concept Metadata package (Covid-19_concepts) to include in the Reference application Metadata module .
Note , to build the package , i simply did a text search for “covid” and “corona” on the MDSBuilder, and included all the Concepts in the result-set into the package.
Part of the result set is concept 165858
“COVID-19 diagnoses for PIH”, should we aslo include it in the reference application metadata package ?
Are there other concepts we would want to add to this package?.
I think you would want to use the COVID subset on OCL for that… although there would be overlaps with existing concepts in the Ref App. Somehow I think we need to be more careful about differentiating from the Ref App concept package and the COVID additions. ideas beyond text searching?
I created concept 165858 (“COVID-19 diagnoses for PIH”) which includes many of the new diagnoses added for COVID-19, but likely not complete for others. This was created on mdsbuilder for PIH and to bring into our dictionary, but I don’t expect others to use it. It’s not a CIEL concept.
@mozzy I’ve create a list of all the concept ids in the CIEL COVID starter set not in the RefApp (at least for the last version of 2.10). I think that’s roughly the set of concepts we want in the COVID metadata package.
This is awesome Ian. I will continue to release additional terms in the next day or so which are not in the current release (and won’t be in the ref app):
165858
Sweating
Finding
N/A
165859
Abbott RealTime SARS-CoV-2 test
Test
Coded
165860
Centers for Disease Control and Prevention (CDC) 2019-Novel Coronavirus (2019-nCoV) Real-Time Reverse Transcriptase (RT)-PCR Diagnostic Panel
Test
N/A
165861
Hologic Panther Fusion® SARS-CoV-2 test
Test
Coded
165862
Sequential organ failure assessment score
Finding
Numeric
165863
National early warning score
Finding
Numeric
165864
History of supplemental oxygen therapy
Finding
Coded
165865
Xpert® Xpress SARS-CoV-2 antigen test
Test
Coded
165866
History of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) disease
Diagnosis
Coded
165867
Acute respiratory distress syndrome (ARDS) due to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Diagnosis
N/A
165868
Lower respiratory tract infection due to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Diagnosis
N/A
165869
Acute bronchitis caused by severe acute respiratory syndrome coronavirus 2
Diagnosis
N/A
159640
Patient health status
Question
Coded
165870
Patient condition resolved
Finding
N/A
165871
Patient condition unresolved
Finding
N/A
160432
Dead
Misc
N/A
1067
Unknown
Misc
N/A
165872
Tocilizumab
Drug
Misc
165873
Sarilumab
Drug
Misc
165874
Baricitinib
Drug
Misc
165875
Boceprevir
Drug
Misc
165876
Siltuximab
Drug
Misc
165877
Favilavir
Drug
Misc
165878
Remdesivir
Drug
Misc
165879
Pegylated interferon alfa-2b
Drug
Misc
165880
Pegylated interferon alfa-2a
Drug
Misc
165881
Pegylated interferon beta-1b
Drug
Misc
165882
History of positive test for SARS-CoV-2
Finding
Coded
165883
Myocarditis due to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Diagnosis
N/A
165884
Encephalopathy due to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Diagnosis
N/A
165885
Gastroenteritis due to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Diagnosis
N/A
165886
Otitis media due to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Diagnosis
N/A
165887
Bronchitis due to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)