Uploading patient images to bahmni

[jmbabazi (James Mbabazi)]

Hi TW team,

Uploaded images are stored in /home/bahmni/document_images. The tree command gives the output below.

document_images │ └── 100 │ ├── 1193-Consultation-1de16bb1-94f4-431a-8521-886b5469666b.png │ ├── 1193-Consultation-1de16bb4-94f4-431a-8521-886b5469666b_thumbnail.png │ ├── 1193-Consultation-49105adr-3eaa-4a86-b669-e52cfa640292.png │ ├── 1193-Consultation-49105adk-3eaa-4a86-b669-e52cfa640292_thumbnail.png │ ├── 1193-Consultation-de0ba9df-ak2c-4ad3-be05-5dd7682cae8f.png │ ├── 1193-Consultation-de0ba9df-ae1c-4ad3-be05-5dd7682cae8f_thumbnail.png │ ├── 2295-Consultation-f314d3af-9daa-4720-8a04-a06eb1aee85b.png │ └── 2295-Consultation-f314d3af-9daO-4720-8a04-a06eb1aee85b_thumbnail.png

Where 1193 and 2295 are patient_ids and the UUID is auto-generated.

When I try to create a new instance with same openmrs database and configurations as the server that has the images above then add the images to their respective folders in /home/bahmni/document_images, the images are not displayed in the Documents tab.

I’m wondering if there is something I am doing wrong?

[darius (Darius Jazayeri)]

Moved to the #software:bahmni category.

[binduak (Himabindu Akkinepalli)]

Hi @jmbabazi, Can you tell us the approach that you have followed to copy database and configuration files from one instance to other instance. We suggest you to follow Backup/Restore commands wiki page to take backup from one instance and restore it in other instance as it has the support for file backup.

[jmbabazi (James Mbabazi)]

Thanks @binduak

My approach is manual.

Copying the images in /home/bahmni/document_images, ensuring the the document_images folder and all its content have bahmni:bahmni user and group.

So I tried what was suggested in the link you gave me, but it doesn’t work.

The command below gives: bahmni -i local bahmni --backup_type=file --options=all

Usage: bahmni [OPTIONS] COMMAND [ARGS]…

Error: No such command “bahmni”.

bahmni --help on my instance yields

Usage: bahmni [OPTIONS] COMMAND [ARGS]…

Options: -I, --implementation TEXT Option to specify the implementation config to be installed. Default value is default. If this options is used, implementation config folder has to be placed in /etc /bahmni-installer/deployment-artifacts with name _config -i, --inventory TEXT Inventory file that needs to picked up from /etc/bahmni-installer [required] -path, --sql_path TEXT Option to accept the exact file path from which the db will be restored -db, --database TEXT Option to accept the specific database name -v, --verbose verbose operation -impl-play, --implementation_play TEXT Path of implementation specific ansible play -m, --migrate TEXT Give a comma seperated list of modules to run migrations for. It has to be used with run_migrations command.Ex: bahmni --migrate erp,elis,mrs run_migrations -o, --only TEXT Install only specified components. Possible values can be bahmni-emr, bahmni-reports, bahmni-lab, bahmni-erp, dcm4chee, pacs- integration, bahmni-event-log-service -s, --skip TEXT Skip installation of specified components. Possible values can be bahmni-emr, bahmni- reports, bahmni-lab, bahmni-erp, dcm4chee, pacs-integration, bahmni-event-log-service -av, --ansible_version TEXT Option to specify ansible version to be used for running installer playbooks –help Show this message and exit.

Commands: concat-configs Concatenating configs from /var/www/bahmni_config/openmrs directory db-backup Take db backup in DB machine at /db-backup directory. Optionally can be copied to the local machine as well db-restore Restore the sql dump present in the path provided. Also pass the exact file path and the database name install Installs bahmni components on respective hosts specified in inventory file install-certs Install SSL certificates using LetsEncrypt install-impl Installs bahmni implementation specific customizations on respective hosts specified in inventory file install-nagios Installs nagios server and nagios agents. restart restart all the services required for bahmni run_migrations Execute all/selected migrations setup-mysql-replication sets up mysql db replication setup-postgres-replication sets up postgres db replication start starts all the services required for bahmni stop stops all the services required for bahmni update-config updates the implementation config from the location /etc/bahmni-installer/deployment- artifacts version Print the Bahmni installer version

I guess there is no way to backup and restore the document_images folder using the bahmni commands?

[jmbabazi (James Mbabazi)]

@binduak, @bharatak, @maheshonopenmrs, @darius. Ideas on how this can be solved?

[binduak (Himabindu Akkinepalli)]

Hi @jmbabazi,[quote=“jmbabazi, post:1, topic:11498”] ├── 1193-Consultation-1de16bb1-94f4-431a-8521-886b5469666b.png│ ├── 1193-Consultation-1de16bb4-94f4-431a-8521-886b5469666b_thumbnail.png [/quote]

These are not patient document images that you can see in the documents tab as mentioned in this wiki page. These are patient consultation images that got uploaded from Observation tab. You can see these consultation images if you open that particular visit of the patient when it got uploaded. You can also try it in demo.mybahmni.org.

[jmbabazi (James Mbabazi)]

Thanks @binduak! I think endTB bahmni has its specific configurations. My main interest/concern is how can this be restored in case you have an issue with your system?

Currently it looks like it is impossible to restore these image. i.e when you restore these images to /home/bahmni/document_images they are not displayed in the documents tab.

Help on this is highly appreciated.

[swathivarkala]

Hi @jmbabazi,

@jmbabazi

I think endTB bahmni has its specific configurations. My main interest/concern is how can this be restored in case you have an issue with your system?

The document_images thing is not a specific endtb-configuration. Endtb has got a different use case to use it.

@jmbabazi

Currently it looks like it is impossible to restore these image. i.e when you restore these images to /home/bahmni/document_images they are not displayed in the documents tab.

Ideally having the /home/bahmni/document_images folder restore along with Data base restore should work. But in your case the image is still not displayed. But do you see the observation under Documents Tab? I am anticipating that the permission to the folders/files might have got messed up because it was restore.Please find the below for the right permissions on the folders & files.

$cd /home/bahmni && ll drwxr-xr-x. 14 bahmni bahmni 4096 Jun 2 14:44 document_images

$cd /home/bahmni/document_images && ll drwxr-xr-x. 2 bahmni bahmni 4096 May 3 16:08 100 drwxr-xr-x. 2 bahmni bahmni 4096 Nov 29 2016 1000 drwxr-xr-x. 2 bahmni bahmni 4096 Nov 4 2016 1100

$cd document_images/100 && ll -rw-r–r–. 1 bahmni bahmni 30660 May 3 16:08 98-Consultation-703062d7-8701-4420-9860-e3279fa6ae89.pdf -rw-r–r–. 1 bahmni bahmni 30660 May 3 16:01 98-Consultation-c85b3c82-edae-4156-9ad8-c60d0ad17a25.jpeg

---

If this still doesn’t make it work, we need to debug with 1 particular observation and check if the observations table value_complex is referring to correct file.

[jmbabazi (James Mbabazi)]

Thank you @swathivarkala. I’ve managed to restore these images. The issue was with the old DB which didn’t have the value_complex data.

I assume that its okay to just add my other question here instead of creating a new thread. In Documents Tab, you cannot view a pdf file if the json configuration of the patient document is obs-to-obs flowsheet.

To view a pdf document, the config should be like below; but this changes the beautiful tabular display, which most clinicians love.

{code} “documentsObsDisplay”: { “isObservation”: true, “displayType”: “Full-Page”, “dashboardConfig”: { “showGroupDateTime”: false, “persistOrderOfConcepts”: true, “conceptNames”: [ “Documents Template” ] }, “displayOrder”: 1, “translationKey”: “DASHBOARD_TAB_PATIENT_DOCUMENTS_KEY” }, {code}

Is is possible to configure pdf file display as obs-to-obs?

[swathivarkala]

@jmbabazi

Thank you @swathivarkala. I’ve managed to restore these images. The issue was with the old DB which didn’t have the value_complex data.

Great to hear that you have found the reason.

@jmbabazi

I assume that its okay to just add my other question here instead of creating a new thread.

It’s always good idea to start different question in new thread because search will easy when some one is looking for that info.

@jmbabazi

In Documents Tab, you cannot view a pdf file if the json configuration of the patient document is obs-to-obs flowsheet.

Yes. This is a bug.

@jmbabazi

Is is possible to configure pdf file display as obs-to-obs?

As of now this needs a Product level fix. Product team will prioritize this based on the road map. If you are interested in contributing to Bahmni, please go ahead fix it and raise a pull request.