openmrs-module-radiology-fhir-support

charchabil · August 21, 2017, 9:42am

Hello people, would you help me with this issue while trying to convert what i have found in this link about the “openmrs-module-radiology-fhir-support Module” to a “omod” file:

i encountred this errors shown below: INFO: Creating demo patient for RADFHIR module. Name is : radiologyfhirsupport.personName Aug 21, 2017 10:31:45 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator registerFHIRDiagnosticReportHandler INFO: Registering FHIR Diagnostic Report Handler for MRRT templates. Handler name is : radiologyfhirsupport.encounterType Aug 21, 2017 10:31:45 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator registerFHIRDiagnosticReportHandler INFO: FHIR Diagnostic Report Handler for MRRT Reports already exists Aug 21, 2017 10:31:45 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator registerEncounterType INFO: Registering a new EncounterType for MRRTTemplates. This will be used for lookup by FHIR module : radiologyfhirsupport.encounterType Aug 21, 2017 10:31:45 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator addDefaultEncounterRole INFO: Adding default encounter role for radiology fhir module Aug 21, 2017 10:31:45 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator addDefaultEncounterRole INFO: Creating default encounter role for radiologyfhirsupport module Aug 21, 2017 10:31:45 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator addDefaultLocation INFO: Adding default location for MRRT templates Aug 21, 2017 10:31:45 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator addDefaultLocation INFO: Creating demo location to be used for MRRT templates. Location Name : radiologyfhirsupport.locationName Aug 21, 2017 10:31:45 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator addDefaultProvider INFO: Adding default Provider for radiology fhir module Aug 21, 2017 10:31:45 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator addDefaultProvider INFO: Creating a new Encounter Provider Type for Radiology FHIR Support Module : radiologyfhirsupport.providerIdentifier Aug 21, 2017 10:31:45 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator addDemoPatient INFO: Adding demo patient for RADFHIR module Aug 21, 2017 10:31:45 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator addDemoPatient INFO: Creating demo patient for RADFHIR module. Name is : radiologyfhirsupport.personName Aug 21, 2017 10:31:45 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator registerFHIRDiagnosticReportHandler INFO: Registering FHIR Diagnostic Report Handler for MRRT templates. Handler name is : radiologyfhirsupport.encounterType Aug 21, 2017 10:31:45 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator registerFHIRDiagnosticReportHandler INFO: FHIR Diagnostic Report Handler for MRRT Reports already exists Aug 21, 2017 10:31:45 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator registerEncounterType INFO: Registering a new EncounterType for MRRTTemplates. This will be used for lookup by FHIR module : radiologyfhirsupport.encounterType Aug 21, 2017 10:31:45 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator addDefaultEncounterRole INFO: Adding default encounter role for radiology fhir module Aug 21, 2017 10:31:45 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator addDefaultEncounterRole INFO: Creating default encounter role for radiologyfhirsupport module Aug 21, 2017 10:31:45 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator addDefaultLocation INFO: Adding default location for MRRT templates Aug 21, 2017 10:31:45 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator addDefaultLocation INFO: Creating demo location to be used for MRRT templates. Location Name : radiologyfhirsupport.locationName Aug 21, 2017 10:31:45 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator addDefaultProvider INFO: Adding default Provider for radiology fhir module Aug 21, 2017 10:31:45 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator addDefaultProvider INFO: Creating a new Encounter Provider Type for Radiology FHIR Support Module : radiologyfhirsupport.providerIdentifier Aug 21, 2017 10:31:45 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator addDemoPatient INFO: Adding demo patient for RADFHIR module Aug 21, 2017 10:31:45 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator addDemoPatient INFO: Creating demo patient for RADFHIR module. Name is : radiologyfhirsupport.personName Aug 21, 2017 10:31:46 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator registerFHIRDiagnosticReportHandler INFO: Registering FHIR Diagnostic Report Handler for MRRT templates. Handler name is : radiologyfhirsupport.encounterType Aug 21, 2017 10:31:46 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator registerFHIRDiagnosticReportHandler INFO: FHIR Diagnostic Report Handler for MRRT Reports already exists Aug 21, 2017 10:31:46 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator registerEncounterType INFO: Registering a new EncounterType for MRRTTemplates. This will be used for lookup by FHIR module : radiologyfhirsupport.encounterType Aug 21, 2017 10:31:46 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator addDefaultEncounterRole INFO: Adding default encounter role for radiology fhir module Aug 21, 2017 10:31:46 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator addDefaultEncounterRole INFO: Creating default encounter role for radiologyfhirsupport module Aug 21, 2017 10:31:46 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator addDefaultLocation INFO: Adding default location for MRRT templates Aug 21, 2017 10:31:46 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator addDefaultLocation INFO: Creating demo location to be used for MRRT templates. Location Name : radiologyfhirsupport.locationName Aug 21, 2017 10:31:46 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator addDefaultProvider INFO: Adding default Provider for radiology fhir module Aug 21, 2017 10:31:46 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator addDefaultProvider INFO: Creating a new Encounter Provider Type for Radiology FHIR Support Module : radiologyfhirsupport.providerIdentifier Aug 21, 2017 10:31:46 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator addDemoPatient INFO: Adding demo patient for RADFHIR module Aug 21, 2017 10:31:46 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator addDemoPatient INFO: Creating demo patient for RADFHIR module. Name is : radiologyfhirsupport.personName Aug 21, 2017 10:31:46 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator registerFHIRDiagnosticReportHandler INFO: Registering FHIR Diagnostic Report Handler for MRRT templates. Handler name is : radiologyfhirsupport.encounterType Aug 21, 2017 10:31:46 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator registerFHIRDiagnosticReportHandler INFO: FHIR Diagnostic Report Handler for MRRT Reports already exists Aug 21, 2017 10:31:46 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator registerEncounterType INFO: Registering a new EncounterType for MRRTTemplates. This will be used for lookup by FHIR module : radiologyfhirsupport.encounterType Aug 21, 2017 10:31:46 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator addDefaultEncounterRole INFO: Adding default encounter role for radiology fhir module Aug 21, 2017 10:31:46 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator addDefaultEncounterRole INFO: Creating default encounter role for radiologyfhirsupport module Aug 21, 2017 10:31:46 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator addDefaultLocation INFO: Adding default location for MRRT templates Aug 21, 2017 10:31:46 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator addDefaultLocation INFO: Creating demo location to be used for MRRT templates. Location Name : radiologyfhirsupport.locationName Aug 21, 2017 10:31:46 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator addDefaultProvider INFO: Adding default Provider for radiology fhir module Aug 21, 2017 10:31:46 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator addDefaultProvider INFO: Creating a new Encounter Provider Type for Radiology FHIR Support Module : radiologyfhirsupport.providerIdentifier Aug 21, 2017 10:31:46 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator addDemoPatient INFO: Adding demo patient for RADFHIR module Aug 21, 2017 10:31:46 AM org.openmrs.module.radiologyfhirsupport.RadiologyFHIRSupportActivator addDemoPatient INFO: Creating demo patient for RADFHIR module. Name is : radiologyfhirsupport.personName Aug 21, 2017 10:31:46 AM org.openmrs.module.radiologyfhirsupport.api.MRRTReportServiceTest testDemoData INFO: Report ID 13 Aug 21, 2017 10:31:46 AM org.openmrs.module.radiologyfhirsupport.api.MRRTReportServiceTest testDemoData INFO: Report XML :

Cardiac MRI: Adenosine Stress Protocol Cardiac MRI: Adenosine Stress Protocol

Field strength: T

Adenosine stress protocol: 0.14 mg/kg/min adenosine infused over 4 minutes with stress perfusion imaging performed during the last minute of the adenosine infusion using an FGRE-ET sequence and a gadolinium dose of 0.1 mmol/kg. Rest perfusion imaging was performed was then performed after appropriate delay using additional gadolinium dose of 0.1 mmol/kg. Cine white blood imaging including short axis and two, three and four chamber long axis views was performed using a FIESTA sequence to evaluate cardiac morphology and function. Delayed enhanced imaging was performed using an Inversion recovery prepared gradient echo sequence. Images were postprocessed on a computer workstation to assess cardiac anatomy and ventricular function.

Clinical information

Comparison

None.

Findings

Stress perfusion imaging:

Rest perfusion imaging:

Cine images: Normal cardiac anatomy and normal cardiac chamber size. Normal left ventricular wall motion and function.

Left ventricle

End-diastole volume: mL

End-systolic volume: mL

Stroke volume: mL

Ejection fraction: %

Mass: g

Antero-septal wall (end-diastole): cm

Infero-lateral wall (end-diastole): cm

Left ventricular diameter measured at the base (end-diastole): cm

Left ventricular diameter measured at the base (end-systole): cm

Delayed enhancement:

Reference

Reference values from: Maceira et al., Normalized left ventricular systolic and diastolic function by steady state free precession cardiovascular magnetic resonance. J Cardiovascular Magn Reson 2006; 8:417-426.

Impression

Aug 21, 2017 10:31:46 AM org.openmrs.module.radiologyfhirsupport.api.MRRTReportServiceTest testDemoData INFO: Report ID 14 Aug 21, 2017 10:31:46 AM org.openmrs.module.radiologyfhirsupport.api.MRRTReportServiceTest testDemoData INFO: Report XML : Chest Xray Chest Xray

PA and lateral views.

Clinical information

Comparison

None.

Findings

Heart:

Lungs:

Bones:

Impression

No acute disease.

Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.686 sec

Results :

Tests run: 23, Failures: 0, Errors: 0, Skipped: 0

[INFO] [INFO] — maven-jar-plugin:2.4:jar (default-jar) @ radiologyfhirsupport-api — [INFO] Building jar: /home/ath/Downloads/openmrs-module-radiology-fhir-support-master/api/target/radiologyfhirsupport-api-1.0-SNAPSHOT.jar [INFO] [INFO] — maven-install-plugin:2.4:install (default-install) @ radiologyfhirsupport-api — [INFO] Installing /home/ath/Downloads/openmrs-module-radiology-fhir-support-master/api/target/radiologyfhirsupport-api-1.0-SNAPSHOT.jar to /home/ath/.m2/repository/org/openmrs/module/radiologyfhirsupport-api/1.0-SNAPSHOT/radiologyfhirsupport-api-1.0-SNAPSHOT.jar [INFO] Installing /home/ath/Downloads/openmrs-module-radiology-fhir-support-master/api/pom.xml to /home/ath/.m2/repository/org/openmrs/module/radiologyfhirsupport-api/1.0-SNAPSHOT/radiologyfhirsupport-api-1.0-SNAPSHOT.pom [INFO]
[INFO] ------------------------------------------------------------------------ [INFO] Building Radiology FHIR Support Module OMOD 1.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [WARNING] The POM for org.openmrs.maven.plugins:maven-openmrs-plugin:jar:1.0.1 is invalid, transitive dependencies (if any) will not be available, enable debug logging for more details [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] Radiology FHIR Support … SUCCESS [ 0.276 s] [INFO] Radiology FHIR Support Module API … SUCCESS [ 14.884 s] [INFO] Radiology FHIR Support Module OMOD … FAILURE [ 0.002 s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 15.326 s [INFO] Finished at: 2017-08-21T10:31:46+01:00 [INFO] Final Memory: 30M/266M [INFO] ------------------------------------------------------------------------ [ERROR] Plugin org.openmrs.maven.plugins:maven-openmrs-plugin:1.0.1 or one of its dependencies could not be resolved: Failed to read artifact descriptor for org.openmrs.maven.plugins:maven-openmrs-plugin:jar:1.0.1: 1 problem was encountered while building the effective model [ERROR] [FATAL] Non-parseable POM /home/ath/.m2/repository/org/openmrs/maven/plugins/maven-openmrs-plugin/1.0.1/maven-openmrs-plugin-1.0.1.pom: end tag name must match start tag name

from line 7 (position: TEXT seen …\n… @9:8) @ line 9, column 8 [ERROR] -> [Help 1] [ERROR] [ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch. [ERROR] Re-run Maven using the -X switch to enable full debug logging. [ERROR] [ERROR] For more information about the errors and possible solutions, please read the following articles: [ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/PluginResolutionException Thank you so much

darius · August 21, 2017, 6:37pm

@charchabil, I don’t know anything about this module, but could it be that you’re getting exactly the same error every time you try to build any OpenMRS module?

What version of maven do you have?

Maybe the file mentioned here is corrupt?

[ERROR] [FATAL] Non-parseable POM /home/ath/.m2/repository/org/openmrs/maven/plugins/maven-openmrs-plugin/1.0.1/maven-openmrs-plugin-1.0.1.pom: end tag name must match start tag name

charchabil · August 23, 2017, 10:33am

Thank you @darius everything is ok now